_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-51
 Query name: gi|929298464|ref|XP_014026610.1| PREDICTED: selenoprotein P [Salmo salar] >gi|929298466|ref|XP_014026611.1| PREDICTED: selenoprotein P [Salmo salar]
 Query range: 1-284  (total 401)

 Target: /data/www-rg/seblastian_results/753106560/tempfiles/temptarget.fasta
 Chromosome: CM007945.1:subseq_68142785,104619_ Strand: +
 Positions:
 -Exon 1  49922        50124
 -Exon 2  50344        50556
 -Exon 3  53812        53929
 -Exon 4  54032        54331

 Redox box: YES

Query   MWAGLSLLLALCLLPGGGTESEGEGTRCKPPPGWSIGEVEPMKEVMGQVTVVALLQASULFCLVQASL <---Intron---> LDGLRLKLEGQGLENV
        | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| <   219bp    > || ||||||||||/||
Target  MKAGLSLLLALCLLPGGGAESEGEGTRCKPPPGWSIGEVEPMKGVMGQVTVVALLQASULFCLVQASL                LDELRLKLEGQGLDNV
        aaggcacccgctcccgggggaggggactacccgtaaggggcaaggagcgagggcccgatttttgcgtt                tggcccacggcgcgag
        tacgtgtttctgttcgggcagagagcggacccgggtgatactagttgatcttcttacggttgttacct                taatgtatagagtaat
        ggggccgcgtccgctgcaagtggggcctgaattgctggggagggtgcgcgggcccgccagccgggac                agtggcggggcgtgctg
                                                                  *                                         

Query   TYMVVNHQGEQAQRLHTLLRQKLSENITLYKQQPKQDDVWQTLAGEKDDFLVYDR <---Intron---> CGRLTYHISLPYSILGTPYVENAIKKTYC
        ||||||||||||| ||||| ||||||| |||| |||||||| |||/|||||/||| <   3255bp   > |||||/|| ||/|||||||||||||/|||
Target  TYMVVNHQGEQAQHLHTLLSQKLSENIILYKQVPKQDDVWQALAGKKDDFLIYDR                CGRLTHHIFLPFSILGTPYVENAIKETYC
        ataggaccggcgccccatcacactgaaattacgcacgggtcgcggaaggtcatga                tgccaccatccttacgactggagaagatt
        catttaaagaacaatacttgaatcaatttaaatcaaaatgactcgaaaatttaag                gggtcaatttctcttgccataactaacag
        ctgggccggggcgctccggcgagtgccagcagacagtcgggcgtaggtcccctc                gtttgcctcccctccgttccagcctggccc
                                                                                                            

Query   TRICGDCSYE <---Intron---> SQEIPAECNRTVEAKPEGEEKPVTGRETTHGGHGHHHHGHGHNDNRHGHNGNRHGHDHHGERGMGRGHGRDHGA
         |||||| || <   102bp    > / |||||||| || ||||||||||| /| ||| ||||||/|     |||/|  ||| ||||  /|| ||| || 
Target  QRICGDCMYE                NTEIPAECNRMVEVKPEGEEKPVTGGDTPHGGRGHHHHGNG-----HGHHGKSHGHGHHGESEVGREHGRGHGV
        ccatggtatg                aagacggtaaagggacggggacgagggaccggcgccccgag-----cgccgaacgcgccggagggcgcgcgcgg
        agtggagtaa                acatccagagttatacagaaactcggaccaggggaaaagag-----agaagagagagaagagatggaagggagt
        acctgccgtg                cagcaagccggagagtgaaggactagtatctaccttctctg-----ctctcacttctctcgtgggcacttctgg
                                                                                                            

Query   ERQQQHQHDTEGLQHGQAQGQLHVGQEHMGQQ
        | |||||/  ||| |||| ||/||||||||||
Target  E-QQQHQNGAEGLHHGQAHGQVHVGQEHMGQQ
        g-cccccaggggcccgcgcgcgcggcgcagcc
        a-aaaaaagcagtaagacagatatgaaatgaa
        g-gggcatctggcctcgctcagcttggtgtgg
                                        
 Sequence until next stop: 
CCCAAGGAGGTGCAGGAAGGGCATATTATGCAGAGGCCCTGA
 P  K  E  V  Q  E  G  H  I  M  Q  R  P  * 

 Distance CDS-SECIS: 720 ; UGA-SECIS: 1377

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007945.1:subseq_68142785,104619_ Strand = + Positions = 55052 - 55121
 Found by:  Infernal (score=30.29) Covels (score=33.42)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -18.74

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((({((---....{[[(((((((((([(.....-.........)]))))))))))]]}..--.--.))}))))).
 target  CCUCCAUCC---AAAAUGAAGGUAGGCACAGAAACU-ACGCUGUAGUGGUGUCUGUCUGAUGU--C--CGGCUGGGGA
                         ****           ^^^                       ****